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circular plasmids  (New England Biolabs)


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    Structured Review

    New England Biolabs circular plasmids
    Circular Plasmids, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 96/100, based on 287 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/circular+plasmids/MfeI/pmc12962856-64-2-7
    Average 96 stars, based on 287 article reviews
    circular plasmids - by Bioz Stars, 2026-09
    96/100 stars

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    Purification:

    Article Title: RNA localization to nuclear speckles follows splicing logic.
    Article Snippet: .. For linearization, circular plasmids were digested by MfeIF(NEB, R3589S) or PciI (NEB, R0665S) and then purified y the GeneJET PCR Purification Kit (Thermo Fisher, K0701). igestion efficiency was verified by agarose gel electrophore- is. .. For linearization, circular plasmids were digested by MfeIF(NEB, R3589S) or PciI (NEB, R0665S) and then purified y the GeneJET PCR Purification Kit (Thermo Fisher, K0701).

    Article Title: Genome-wide identification of functional enhancers and their potential roles in pig breeding
    Article Snippet: The vector backbone was linearized using PCR (95 °C for 5 min; then 25 cycles of 95 °C for 20 s, 57 °C for 20 s and 72 °C for 4 min; Forward primer: 5'-CGT CGT GTA GGG AAA GAG TGT-3' and Reverse primer: 5'-GCA CAC GTC TGA ACT CCA GTC-3'). .. Further, circular plasmids were removed using DpnI (New England BioLabs, Ipswich, MA, USA) at 37 °C for 30 min. Linearized vector was separated using a 1% agarose gel and purified with E.Z.N.A.® Gel Extraction Kit. .. We then recombined the genomic DNA fragments into the linearized vector using ClonExprress II One Step Cloning Kit (Vazyme, Nanjing, China).

    Article Title: RNA localization to nuclear speckles follows splicing logic
    Article Snippet: .. For linearization, circular plasmids were digested by MfeI-HF(NEB, R3589S) or PciI (NEB, R0665S) and then purified by the GeneJET PCR Purification Kit (Thermofisher, K0701). ..

    Article Title: RNA localization to nuclear speckles follows splicing logic
    Article Snippet: .. For linearization, circular plasmids were digested by MfeI-HF(NEB, R3589S) or PciI (NEB, R0665S) and then purified by the GeneJET PCR Purification Kit (Thermo Fisher, K0701). ..

    Polymerase Chain Reaction:

    Article Title: RNA localization to nuclear speckles follows splicing logic.
    Article Snippet: .. For linearization, circular plasmids were digested by MfeIF(NEB, R3589S) or PciI (NEB, R0665S) and then purified y the GeneJET PCR Purification Kit (Thermo Fisher, K0701). igestion efficiency was verified by agarose gel electrophore- is. .. For linearization, circular plasmids were digested by MfeIF(NEB, R3589S) or PciI (NEB, R0665S) and then purified y the GeneJET PCR Purification Kit (Thermo Fisher, K0701).

    Article Title: RNA localization to nuclear speckles follows splicing logic
    Article Snippet: .. For linearization, circular plasmids were digested by MfeI-HF(NEB, R3589S) or PciI (NEB, R0665S) and then purified by the GeneJET PCR Purification Kit (Thermofisher, K0701). ..

    Article Title: RNA localization to nuclear speckles follows splicing logic
    Article Snippet: .. For linearization, circular plasmids were digested by MfeI-HF(NEB, R3589S) or PciI (NEB, R0665S) and then purified by the GeneJET PCR Purification Kit (Thermo Fisher, K0701). ..

    Agarose Gel Electrophoresis:

    Article Title: RNA localization to nuclear speckles follows splicing logic.
    Article Snippet: .. For linearization, circular plasmids were digested by MfeIF(NEB, R3589S) or PciI (NEB, R0665S) and then purified y the GeneJET PCR Purification Kit (Thermo Fisher, K0701). igestion efficiency was verified by agarose gel electrophore- is. .. For linearization, circular plasmids were digested by MfeIF(NEB, R3589S) or PciI (NEB, R0665S) and then purified y the GeneJET PCR Purification Kit (Thermo Fisher, K0701).

    Article Title: Genome-wide identification of functional enhancers and their potential roles in pig breeding
    Article Snippet: The vector backbone was linearized using PCR (95 °C for 5 min; then 25 cycles of 95 °C for 20 s, 57 °C for 20 s and 72 °C for 4 min; Forward primer: 5'-CGT CGT GTA GGG AAA GAG TGT-3' and Reverse primer: 5'-GCA CAC GTC TGA ACT CCA GTC-3'). .. Further, circular plasmids were removed using DpnI (New England BioLabs, Ipswich, MA, USA) at 37 °C for 30 min. Linearized vector was separated using a 1% agarose gel and purified with E.Z.N.A.® Gel Extraction Kit. .. We then recombined the genomic DNA fragments into the linearized vector using ClonExprress II One Step Cloning Kit (Vazyme, Nanjing, China).

    Gel Extraction:

    Article Title: Genome-wide identification of functional enhancers and their potential roles in pig breeding
    Article Snippet: The vector backbone was linearized using PCR (95 °C for 5 min; then 25 cycles of 95 °C for 20 s, 57 °C for 20 s and 72 °C for 4 min; Forward primer: 5'-CGT CGT GTA GGG AAA GAG TGT-3' and Reverse primer: 5'-GCA CAC GTC TGA ACT CCA GTC-3'). .. Further, circular plasmids were removed using DpnI (New England BioLabs, Ipswich, MA, USA) at 37 °C for 30 min. Linearized vector was separated using a 1% agarose gel and purified with E.Z.N.A.® Gel Extraction Kit. .. We then recombined the genomic DNA fragments into the linearized vector using ClonExprress II One Step Cloning Kit (Vazyme, Nanjing, China).

    Functional Assay:

    Article Title: Genome-wide enhancer identification by massively parallel reporter assay in Arabidopsis.
    Article Snippet: Yongjun Tan, Xiaohao Yan, Jialei Sun, Jing Wan, Xinxin Li, Yingzhang Huang, Li Li, Longjian Niu and Chunhui Hou State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650201, China, Department of Biology, Southern University of Science and Technology, Shenzhen 518055, China, Department of Bioinformatics, Huazhong Agricultural University, Wuhan 430070, China, School of Public Health and Emergency Management, Southern University of Science and Technology, Shenzhen 518055, China, and Shenzhen Key Laboratory of Cardiovascular Health and Precision Medicine, Southern University of Science and Technology, Shenzhen 518055, China

    Plasmid Preparation:

    Article Title: A Conserved Motif in Tetrahymena thermophila Telomerase Reverse Transcriptase Is Proximal to the RNA Template and Is Essential for Boundary Definition
    Article Snippet: PCR Mutagenesis—Plasmids containing the T. thermophila RBD fused to an N-terminal His tag were PCR-mutagenized using custom DNA primers. .. Linear plasmid amplicons were treated with T4 polynucledotide kinase (NEB) and T4 DNA ligase to generate circular plasmids, which were used to transform Escherichia coli 10 cells. ..



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